Web ProtMate (Old)

Web ProtMate

Laboratory calculations in your browser: analyse protein sequences, DNA concentrations and primer melting points, and generate scripts for molecular modelling tools.

Protein tools

Protein Sequence Analyzer

Composition, molecular weight and extinction coefficient.

Protein Concentration

Concentration from A280 and the extinction coefficient.

DNA / nucleotide tools

Oligonucleotide Concentration

Concentration of dsDNA, RNA or oligos from A260.

Oligonucleotide Analysis

Composition and melting temperature of a primer.

Molecular modelling tools

AutoDock Vina Script Generator

Write a configuration file for AutoDock Vina.

Other tools

Weight-Volume Calculator

Solute weight or solvent volume for a w/v ratio.

Incremental Cell Counter

Two tap counters for counting cells.

A newer version of these tools is available as Web ProtMate (New), and as the ProtMate desktop app.